Morphologically Rich Languages (MRLs) such as Arabic, Hebrew and Turkish often require Morphological Disambiguation (MD), i.e., the prediction of the correct morphological decomposition of tokens into morphemes, early in the pipeline. Neural MD may be addressed as a simple pipeline, where segmentation is followed by sequence tagging, or as an end-to-end model, predicting morphemes from raw tokens. Both approaches are suboptimal; the former is heavily prone to error propagation, and the latter does not enjoy explicit access to the basic processing units called morphemes. This paper offers an MD architecture that combines the symbolic knowledge of morphemes with the learning capacity of neural end-to-end modeling. We propose a new, general and easy-to-implement Pointer Network model where the input is a morphological lattice and the output is a sequence of indices pointing at a single disambiguated path of morphemes. We demonstrate the efficacy of the model on segmentation and tagging, for Hebrew and Turkish texts, based on their respective Universal Dependencies (UD) treebanks. Our experiments show that with complete lattices, our model outperforms all shared-task results on segmenting and tagging these languages. On the SPMRL treebank, our model outperforms all previously reported results for Hebrew MD in realistic scenarios.