Treebanks are curial for natural language processing (NLP). In this paper, we present our work for annotating a Chinese treebank in scientific domain (SCTB), to address the problem of the lack of Chinese treebanks in this domain. Chinese analysis and machine translation experiments conducted using this treebank indicate that the annotated treebank can significantly improve the performance on both tasks. This treebank is released to promote Chinese NLP research in scientific domain.